BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB026E10LP1|AL428567
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1333 769 0.0
3x_Contig1221 139 6e-33
>3x_Contig1333
Length = 6390
Score = 769 bits (386), Expect = 0.0
Identities = 394/396 (99%), Gaps = 1/396 (0%)
Strand = Plus / Minus
Query: 1 gatcaacatgttaccatttgtattgtacgctaccgggtaaaccaaggactgtaccttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gatcaacatgttaccatttgtattgtacgctaccgggtaaaccaaggactgtaccttatt 337
Query: 61 caaataatcatactcgaatactttacggcagtattcatccaaatcactgactttgaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 caaataatcatactcgaatactttacggcagtattcatccaaatcactgactttgaccaa 277
Query: 121 tggaatatcgaattttcttttcggtacagcgcatggaattgttatctcttcatgtgtttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tggaatatcgaattttcttttcggtacagcgcatggaattgttatctcttcatgtgtttg 217
Query: 181 gaaagtatatctcatgcttccagctggtaatgcaaatttttgacctgcaaaagaaagcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaaagtatatctcatgcttccagctggtaatgcaaatttttgacctgcaaaagaaagcat 157
Query: 241 tgacgatccagcatcctccgactgtctaaagacatgtggatactttacttttctttgtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tgacgatccagcatcctccgactgtctaaagacatgtggatactttacttttctttgtgc 97
Query: 301 agtagccaatttagcgtttttacctttttccctattcttgaggrcttgtcttctcatgtc 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 96 agtagccaatttagcgtttttacctttttccctattcttgaggacttgtcttctcatgtc 37
Query: 361 ctcttcggtcatgaa-tcggtttccctcgtaagtat 395
||||||||||||||| ||||||||||||||||||||
Sbjct: 36 ctcttcggtcatgaattcggtttccctcgtaagtat 1
>3x_Contig1221
Length = 4893
Score = 139 bits (70), Expect = 6e-33
Identities = 87/92 (94%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 785 aattcctcatcgaccttagggattwgtgcttgtatctaaatgagggaatgcatgagmtgc 844
|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |||
Sbjct: 5 aattcctcatcgaccttagggatt-gtgcttgtatctagatgagggaatgcctgagctgc 63
Query: 845 tgaaaccattacttccatcggcttcatataag 876
|||||||||||||||||||| |||||||||||
Sbjct: 64 tgaaaccattacttccatcgccttcatataag 95
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6356
Number of Sequences: 1807
Number of extensions: 6356
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 2
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.1 bits)